Steps to run WRF/Chem, Xiaoming HU, xhu@ou.edu
--------------------------------Simple version---
1, login micromet.met.psu.edu
   do "ssh -X yourusername@micromet.met.psu.edu" in terminal under Linux machine

2, set .bashrc under home directory
   vi ~/.bashrc
   add following lines in the file
   export NETCDF=/usr/global/netcdf-3.6.2-64bit-pgi
   export NCARG_ROOT=/home/meteo/xgh5015/tools/ncl
   export WRF_CHEM=1
   export
PATH=.:/home/meteo/xgh5015/tools/ncl/bin:/home/meteo/xgh5015/tools/nco-3.9.9/bin:/home/meteo/xgh5015/tools/antlr-2.7.7/bin:/tools/ncview-1.93f-installed/bin:$PATH
   do "bash"

3, copy WRF/chem package to your dirctory
   cp -pru /micromet/s0/xgh5015/Beltsville_WRFChem/WRFchemPackages/WRFV3 .

4, run WRF/Chem 
   cd WRFV3/test/em_real 
   wrf.exe >& wrf.log &
   if want to check progress, do "tail -f wrf.log"
   
5, plot
   refer to  http://www.ncl.ucar.edu/Applications/wrflc.shtml
   wget http://www.ncl.ucar.edu/Applications/Scripts/WRF_lc_2.ncl
   vi WRF_lc_2.ncl
   change "wrfout_d01_000000" to "wrfout_d01_2010-08-07_01:00:00"
   once you have file "wrfout_d01_2010-08-07_01:00:00" under ./test/em_real;
   do "ncl WRF_lc_2.ncl"
   display WRF_lc.ps

   If you see the figure, congrats!!!!!!!!!

6, check out more WRF/Chem outputs
   http://micromet.psu.edu/datatransfer/Beltsville.html


--------------------------------More complicated version----------------------------------------------------------------------------
1, login risk.met.psu.edu
   do "ssh -X yourusername@risk.met.psu.edu" under Linux machine    
  
2, set .bashrc under home directory
   vi ~/.bashrc
   add following lines in the file
   export NETCDF=/usr/global/netcdf-3.6.2-64bit-pgi
   export NCARG_ROOT=/home/meteo/xgh5015/tools/ncl
   export WRF_CHEM=1
   export PATH=.:/home/meteo/xgh5015/tools/ncl/bin:/home/meteo/xgh5015/tools/nco-3.9.9/bin:/home/meteo/xgh5015/tools/antlr-2.7.7/bin:/tools/ncview-1.93f-installed/bin:$PATH 
   do "bash"

3, download package
   go to the directory you want to put the model package;
   do "wget http://www.mmm.ucar.edu/wrf/src/WRFV3.3.TAR.gz"

4, unpack
tar xvf WRFV3.3.TAR

5, download code for chemistry processes
  inside the "WRFV3" directory
  do "wget http://www.mmm.ucar.edu/wrf/src/WRFV3-Chem-3.3.TAR.gz"
  tar xvf WRFV3-Chem-3.3.TAR.gz

5, configure and compile
  cd ./WRFV3
  ./configure 
  choose 1 
  enter
  ./compile em_real > compile.log
  
6, get IC/BC
   cd ./test/em_real
   ln -s
/micromet/s0/xgh5015/Beltsville_WRFChem/WRFcheminputs_forAug7_11Cases/wrfchemi_*
.
   ln -s
/micromet/s0/xgh5015/Beltsville_WRFChem/WRFcheminputs_forAug7_11Cases/wrfbdy_d01
.
  ln -s
/micromet/s0/xgh5015/Beltsville_WRFChem/WRFcheminputs_forAug7_11Cases/wrfinput_d0*
.
  cp
/micromet/s0/xgh5015/Beltsville_WRFChem/WRFchemPackages/WRFV3/test/em_real/namelist.input
.

7, run WRF/Chem 
   wrf.exe >& wrf.log &
   if want to check progress, do "tail -f wrf.log"
   
8, plot
   refer to  http://www.ncl.ucar.edu/Applications/wrflc.shtml
   wget http://www.ncl.ucar.edu/Applications/Scripts/WRF_lc_2.ncl
   vi WRF_lc_2.ncl
   change "wrfout_d01_000000" to "wrfout_d01_2010-08-07_01:00:00"
   once you have file "wrfout_d01_2010-08-07_01:00:00" under ./test/em_real; do "ncl WRF_lc_2.ncl"
   display WRF_lc.ps

   If you see the figure, congrats!!!!!!!!!

9, check out more WRF/Chem outputs
   http://micromet.psu.edu/datatransfer/Beltsville.html